R-3.3.1源码安装

1、yum install readline-devel gcc*

2、yum install libXt-devel

3、tar zxvf R-3.3.1.tar.gz

cd R-3.3.1

    ./configure --prefix=/opt/R-3.3.1   --enable-R-shlib

    报错：

    checking for zlib.h... yes

    checking if zlib version >= 1.2.5... no

    checking whether zlib support suffices... configure: error: zlib library and headers are required  ##缺少zlib或者zlib版本过低

4、安装zlib

tar xvf zlib-1.2.8.tar.gz

cd zlib-1.2.8

./configure --prefix=/opt/zlib-1.2.8

make && make install

5、cd /root/R-3.3.1

./configure --prefix=/opt/R-3.3.1   --enable-R-shlib LDFLAGS="-L/opt/zlib-1.2.8/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include"

报错：

checking for zlib.h... yes

checking if zlib version >= 1.2.5... yes

checking whether zlib support suffices... yes

checking mmap support for zlib... yes

checking for BZ2_bzlibVersion in -lbz2... no

checking whether bzip2 support suffices... configure: error: bzip2 library and headers are required  ##zlib版本已经符合要求，缺少bzip2

6、安装bzip2

tar zxvf bzip2-1.0.6.tar.gz

cd bzip2-1.0.6

make -f Makefile-libbz2_so

make clean

make 

make install PREFIX=/opt/bzip2-1.0.6

7、./configure --prefix=/opt/R-3.3.1   --enable-R-shlib LDFLAGS="-L/opt/zlib-1.2.8/lib -L/opt/bzip2-1.0.6/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include -I/opt/bzip2-1.0.6/include"

报错：

checking if bzip2 version >= 1.0.6... yes

checking whether bzip2 support suffices... no

checking for lzma_version_number in -llzma... no  ##bzip2版本符合要求，但是lzma(xz软件包)缺少

8、安装xz

tar zxvf xz-5.2.2.tar.gz

cd /root/xz-5.2.2

./configure --prefix=/opt/xz-5.2.2

make -j3

make install

9、./configure --prefix=/opt/R-3.3.1   --enable-R-shlib LDFLAGS="-L/opt/zlib-1.2.8/lib -L/opt/bzip2-1.0.6/lib -L/opt/xz-5.2.2/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include -I/opt/bzip2-1.0.6/include -I/opt/xz-5.2.2/include"

报错：

checking whether bzip2 support suffices... no

checking for lzma_version_number in -llzma... yes

checking lzma.h usability... yes

checking lzma.h presence... yes

checking for lzma.h... yes

checking if lzma version >= 5.0.3... yes

checking for pcre_fullinfo in -lpcre... no     

checking whether PCRE support suffices... configure: error: pcre >= 8.10 library and headers are required  ##xz版本符合要求,prce版本过低或者缺少

10、安装pcre

tar zxvf pcre-8.39.tar.gz

cd /root/pcre-8.39

./configure  --prefix=/opt/pcre-8.39

make -j3 && make install

11、./configure --prefix=/opt/R-3.3.1   --enable-R-shlib LDFLAGS="-L/opt/zlib-1.2.8/lib -L/opt/bzip2-1.0.6/lib -L/opt/xz-5.2.2/lib -L/opt/pcre-8.39/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include -I/opt/bzip2-1.0.6/include -I/opt/xz-5.2.2/include -I/opt/pcre-8.39/include"

报错：

checking for pcre.h... yes

checking pcre/pcre.h usability... no

checking pcre/pcre.h presence... no

checking for pcre/pcre.h... no

checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... no

checking whether PCRE support suffices... configure: error: pcre >= 8.10 library and headers are required   ##PCRE需要安装--enable-utf8

12、重新安装pcre

rm -rf /opt/pcre-8.39

cd /root/pcre-8.39  

./configure  --prefix=/opt/pcre-8.39  --enable-utf8

make -j3 && make install

13、./configure --prefix=/opt/R-3.3.1   --enable-R-shlib LDFLAGS="-L/opt/zlib-1.2.8/lib -L/opt/bzip2-1.0.6/lib -L/opt/xz-5.2.2/lib -L/opt/pcre-8.39/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include -I/opt/bzip2-1.0.6/include -I/opt/xz-5.2.2/include -I/opt/pcre-8.39/include/"

报错：

checking pcre/pcre.h usability... no

checking pcre/pcre.h presence... no

checking for pcre/pcre.h... no

checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes

checking if PCRE version >= 8.32... yes

checking whether PCRE support suffices... yes

checking for curl-config... no

checking curl/curl.h usability... no

checking curl/curl.h presence... no

checking for curl/curl.h... no

configure: error: libcurl >= 7.28.0 library and headers are required with support for https    ##需要安装curl

14、安装curl

    yum install openssl*                                  ##需要支持ssl服务

tar zxvf curl-7.50.1.tar.gz

cd /root/curl-7.50.1

./configure  --prefix=/opt/curl-7.50.1

make && make install

15、./configure --prefix=/opt/R-3.3.1 --enable-R-shlib  LDFLAGS="-L/opt/zlib-1.2.8/lib  -L/opt/bzip2-1.0.6/lib -L/opt/xz-5.2.2/lib -L/opt/pcre-8.39/lib -L/opt/curl-7.50.1/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include -I/opt/bzip2-1.0.6/include -I/opt/xz-5.2.2/include -I/opt/pcre-8.39/include -I/opt/curl-7.50.1/include"

报错：

checking curl/curl.h usability... yes

checking curl/curl.h presence... yes

checking for curl/curl.h... yes

checking if libcurl is version 7 and >= 7.28.0... yes

checking if libcurl supports https... no

configure: error: libcurl >= 7.28.0 library and headers are required with support for https  ##这是一个大坑需要在环境变量中加上curl的bin路径，如果没有报错，那肯定是之前系统默认安装的curl造成的，为了

                                                                                              消除潜在风险，是否有报错，请必须执行下面的操作，系统默认安装的curl请保留，防止造成别的系统程序依赖缺失

16、最终操作

   ./configure --prefix=/opt/R-3.3.1 --enable-R-shlib  LDFLAGS="-L/opt/zlib-1.2.8/lib  -L/opt/bzip2-1.0.6/lib -L/opt/xz-5.2.2/lib -L/opt/pcre-8.39/lib -L/opt/curl-7.50.1/lib" CPPFLAGS="-I/opt/zlib-1.2.8/include -I/opt/bzip2-1.0.6/include -I/opt/xz-5.2.2/include -I/opt/pcre-8.39/include -I/opt/curl-7.50.1/include"

vim /etc/profile 

export PATH=$PATH:$JAVA_HOME/bin:/opt/curl-7.50.1/bin                    ##在这一行加上":/opt/curl-7.50.1/bin"

    source /etc/profile                                                      ##让环境变量立马生效

验证；

echo $PATH

/usr/lib64/qt-3.3/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin:/opt/java/jdk1.8.0_74/bin:/opt/curl-7.50.1/bin

    make

报错：

/usr/bin/ld: warning: libpcre.so.1, needed by ../../lib/libR.so, not found (try using -rpath or -rpath-link)

/usr/bin/ld: warning: liblzma.so.5, needed by ../../lib/libR.so, not found (try using -rpath or -rpath-link)

../../lib/libR.so: undefined reference to `lzma_code@XZ_5.0'

../../lib/libR.so: undefined reference to `lzma_raw_encoder@XZ_5.0'

../../lib/libR.so: undefined reference to `lzma_stream_decoder@XZ_5.0'

../../lib/libR.so: undefined reference to `pcre_free'

../../lib/libR.so: undefined reference to `lzma_lzma_preset@XZ_5.0'

../../lib/libR.so: undefined reference to `lzma_raw_decoder@XZ_5.0'

../../lib/libR.so: undefined reference to `pcre_version'

../../lib/libR.so: undefined reference to `pcre_exec'

../../lib/libR.so: undefined reference to `pcre_config'

../../lib/libR.so: undefined reference to `pcre_fullinfo'

../../lib/libR.so: undefined reference to `pcre_maketables'

../../lib/libR.so: undefined reference to `pcre_compile'

../../lib/libR.so: undefined reference to `lzma_end@XZ_5.0'

../../lib/libR.so: undefined reference to `lzma_alone_decoder@XZ_5.0'

../../lib/libR.so: undefined reference to `lzma_version_string@XZ_5.0'

../../lib/libR.so: undefined reference to `lzma_crc64@XZ_5.0'

../../lib/libR.so: undefined reference to `pcre_study'

../../lib/libR.so: undefined reference to `lzma_stream_encoder@XZ_5.0'

collect2: ld returned 1 exit status

make[3]: *** [R.bin] Error 1

make[3]: Leaving directory `/root/R-3.3.1/src/main'

make[2]: *** [R] Error 2

make[2]: Leaving directory `/root/R-3.3.1/src/main'

make[1]: *** [R] Error 1

make[1]: Leaving directory `/root/R-3.3.1/src'

make: *** [R] Error 1

此处报错是由于没有找到动态库，看第一二行

解决方法：添加动态库

#cat /etc/ld.so.conf

include ld.so.conf.d/*.conf

/opt/pcre-8.39/lib

/opt/xz-5.2.2/lib

然后执行

#ldconfig

make

make install

vim /etc/profile      ##添加R源环境变量

export PATH=$PATH:$JAVA_HOME/bin:/opt/curl-7.50.1/bin:/opt/R-3.3.1/bin

    source /etc/profile   ##让环境变量立马生效